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Best Invoicing and Billing Software for 2025: Top Picks for Small Businesses and Freelancers

Jung Min-seo by Jung Min-seo
April 30, 2025
in Software
0

FintechZoom > Business > Tech > Software > Best Invoicing and Billing Software for 2025: Top Picks for Small Businesses and Freelancers

Efficient invoicing and billing are the backbone of any successful business operation. Whether you’re a freelance designer, a solopreneur, or running a small business, getting paid accurately and on time matters. Yet, too often, invoicing becomes a manual, error-prone task—leading to delayed payments, client miscommunication, and hours of wasted productivity.

Fortunately, invoicing software has come a long way. Today’s platforms offer more than just basic invoice templates—they deliver automation, expense tracking, quote generation, real-time reporting, and integrations with payment processors. Among these, Invoice Fly leads the charge, offering a powerful suite of tools tailored to modern freelancers and SMEs who want to streamline their billing process without sacrificing customization or control.

Below, we highlight the best invoicing and billing software platforms for 2025—based on usability, feature set, affordability, and scalability.

1. Invoice Fly – All-in-One Invoicing for Modern Professionals

Overview:
Invoice Fly is more than just an invoicing app—it’s a smart business companion for contractors, freelancers, and small teams. Its intuitive interface, rich feature set, and mobility-first design make it a top choice for users who value time-saving automation without compromising flexibility.

Top Features:

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  • Estimate and Quote Maker: Send detailed, professional quotes that can be easily converted into invoices upon approval—minimizing back-and-forth and speeding up project starts.
  • Invoice Maker: Customize beautiful invoices with your logo, branding, and billing terms. Templates are adaptable to fit various industries and services.
  • Online Payments: Accept payments directly via Stripe, PayPal, and other gateways. Send reminders, track status, and even see when invoices are viewed.
  • Reports & Analytics: Visual dashboards and reports help users monitor revenue, overdue payments, client activity, and financial health over time.
  • Expense Tracker: Log and categorize expenses in real time, attach receipts, and create accurate reports for accounting or tax filing.
  • Mobile App Access: Create invoices, track payments, or send reminders on the go—ideal for freelancers and contractors in the field.

Why It’s #1:
Invoice Fly earns the top spot because it seamlessly combines essential invoicing features with smart automation, all in a beautifully designed, user-friendly interface. It’s especially valuable for service-based businesses, freelancers, and growing teams who want to keep things organized without learning a complex system.

Pro Tip:
Enable recurring invoices for monthly retainer clients and automate reminders to ensure consistent cash flow—just one of many features that sets Invoice Fly apart from older, less agile tools.

2. FreshBooks – Designed for Service-Based Businesses

Overview:
FreshBooks has long been a favorite among consultants, agencies, and creatives—and for good reason. It blends accounting with invoicing, offering a complete package that supports time tracking, project collaboration, and automatic late fees.

Standout Features:

  • Time tracking with team collaboration tools
  • Automated payment reminders and late fees
  • Professional invoice templates with client-specific customizations
  • Client portal for estimates, invoices, and communication

Considerations:
FreshBooks is feature-rich, but the pricing tiers can become steep as your needs grow. Also, advanced reporting is only available on premium plans.

3. Zoho Invoice – Highly Customizable and Free

Overview:
Zoho Invoice is part of the larger Zoho ecosystem, but it stands alone as a powerful tool with deep customization. If you need granular control over invoice templates or tax rules, Zoho Invoice delivers.

What We Love:

  • Highly customizable invoice templates
  • Recurring billing and retainer invoicing
  • Multi-currency and multi-language support
  • Seamless integration with Zoho CRM, Zoho Books, and other tools

Limitations:
The learning curve may be steep for new users, and its full power is best realized when used within the broader Zoho ecosystem.

4. Square Invoices – Perfect for Retail & POS-Driven Businesses

Overview:
If you’re already using Square for POS, Square Invoices is a no-brainer. It lets businesses send digital invoices and collect payments through the same ecosystem—reducing friction and keeping data centralized.

Key Features:

  • Send estimates, contracts, and invoices
  • Accept payments via Square terminals or online
  • Set automatic reminders and payment schedules
  • Track paid/unpaid invoices in real time

Drawback:
Limited in terms of advanced reporting or expense tracking. Best suited for businesses already in the Square ecosystem.

5. Invoice2Go – Mobile Invoicing for Freelancers on the Move

Image from Unsplash

Overview:
Invoice2Go is built for independent professionals who need to invoice from the road or job site. Its mobile-first design makes it easy to manage invoices, accept payments, and track expenses from anywhere.

Strengths:

  • Full-featured mobile app
  • Expense tracking with receipt attachment
  • Simple client management tools
  • Payment reminders and invoice history

Best For:
Contractors, photographers, tradespeople, and other hands-on professionals who work remotely and value fast, efficient billing.

6. QuickBooks Online – For Businesses Needing Full Accounting

Overview:
While known primarily for accounting, QuickBooks Online includes excellent invoicing features. It’s ideal for businesses that want full financial oversight in one system.

Features to Note:

  • Invoicing with automated tax calculations
  • Estimates and progress invoicing for long-term projects
  • Mileage and time tracking
  • Advanced reporting and cash flow management

Heads-Up:
More robust than some users need. If you’re just looking for invoicing, QuickBooks may be overkill.

How to Choose the Right Invoicing Software for Your Needs

Image from Unsplash

When narrowing down your options, ask yourself:

  • Do I need basic invoicing or full accounting?
  • How important are reports and financial insights to my business?
  • Do I need mobile access and invoicing on the go?
  • What payment gateways are supported?
  • Will I need features like quote creation, recurring billing, or multi-currency support?

Whether you’re billing clients by the hour, by project, or with retainer packages, selecting the right tool means fewer delays, better financial insights, and smoother client communication.

According to the U.S. Small Business Administration (SBA), the right invoicing software can significantly improve a business’s cash flow and financial management by automating processes and improving billing transparency. They recommend solutions that combine invoicing with payment processing and reporting—just like Invoice Fly does.

Invoicing is more than just getting paid—it’s about presenting your brand professionally, improving client trust, and keeping finances transparent and on track. The right tool should be easy to use, customizable, and smart enough to grow with your business.

For 2025 and beyond, Invoice Fly emerges as the best all-around invoicing solution for small business owners, freelancers, and growing service-based teams. With its powerful suite of tools—from quote maker to online payments and reporting—it simplifies complex workflows and helps users focus on what really matters: running a successful business.

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Jung Min-seo

Jung Min-seo

Jung Min-Seo is a staff writer covering technology for FintechZoom. Contact: [email protected]

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